PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600091.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 309aa    MW: 34671.4 Da    PI: 6.843
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600091.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-26186239259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fpr    Ct+++C+vkk+vers edp++v++tYeg+Hnh 
  XP_009600091.1 186 EDGYRWRKYGQKAVKNSPFPR----CTTQKCNVKKRVERSYEDPSIVITTYEGQHNHY 239
                     8*******************6....********************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-28170240IPR003657WRKY domain
SuperFamilySSF1182902.35E-23177241IPR003657WRKY domain
PROSITE profilePS5081125.706180241IPR003657WRKY domain
SMARTSM007743.8E-32185240IPR003657WRKY domain
PfamPF031061.1E-19186238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSNNPFYHDY MGTEGINTFP FFGENSSNYN HPPPNNIQNP HQQFVPSSYM TLTECLHSSM  60
DYNTLSSAFG MSCSSSEVVC PQIDRHDYSS RKSSVVSATE SALDSPLEGA SVEIPPTTNS  120
SISSTSNEAE GEEDSSKSKK LMQGKGCQEE GDDKSKKESK AKKKGEKKPK EPRFAFMTKS  180
EIDNLEDGYR WRKYGQKAVK NSPFPRCTTQ KCNVKKRVER SYEDPSIVIT TYEGQHNHYC  240
PATLRGNAVS MLSPSFLSSS QLIPNFPPEI FAQMLNPTSN QNLLINSPYN YHQHQGQEYG  300
SWIHKPEPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-211782421078Probable WRKY transcription factor 4
2lex_A2e-211782421078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600091.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ22e-51WRK28_ARATH; Probable WRKY transcription factor 28
TrEMBLM1AD031e-133M1AD03_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000201021e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-43WRKY DNA-binding protein 28